Professor David Baumler teaches courses in the area of Food Microbiology and Computational Systems Biology.
Spring 2017: FScN 4121 Introductory Microbiology
Spring 2017: FScN 1021 Introductory Microbiology
Spring 2016: FScN 4121 Food Microbiology
Spring 2016: FScN 1021 Introductory Microbiology
Spring 2015: FScN 1021 Introductory Microbiology
Fall 2014: FScN 8391 Systems Biology Approaches for Food Science and Nutrition
Genomics and Biological Modeling Course
Week 1: Overview of Genome scale-metabolic modeling
Week 2: Crash course in linear programming and using GAMS
Week 3: Genes, annotations, to comparative genomics
Week 4: From genomes to metabolic networks
Week 5: Conversion of a metabolic network into a computational model
Week 6: What is the Biomass equation?
Week 7: Linear Optimization using metabolic models for biological inquiry
Week 8: Flux Balance Analysis
Week 9: Dynamic Flux Balance Analysis
Week 10: Gene/Reaction essentiality
Week 11: Simulation of host niche environments
Week 12: Gene Deletion strategies and Bioengineering using metabolic models
Week 13: Flux Variability Analysis
Week 14: Integration of high-throughput data with metabolic models
Week 15: Other types of models: Models for Metabolic/Regulatory or transcriptional and translation machinery, and also Eukaryotic organisms (yeast, plants, and mammalian).
Week 16: Looking forward and backward: Paleo and Evolutionary Systems Biology